HL_8JDL_119

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CCACUCCCGACCCGGGGA(OMG)

Length

19 nucleotides

Bulged bases

8JDL|1|w|A|500, 8JDL|1|w|C|502, 8JDL|1|w|C|503, 8JDL|1|w|G|507

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|w|C|491
8JDL|1|w|C|492
8JDL|1|w|A|493
8JDL|1|w|C|494
8JDL|1|w|U|495
8JDL|1|w|C|496
8JDL|1|w|C|497
8JDL|1|w|C|498
8JDL|1|w|G|499
8JDL|1|w|A|500
8JDL|1|w|C|501
8JDL|1|w|C|502
8JDL|1|w|C|503
8JDL|1|w|G|504
8JDL|1|w|G|505
8JDL|1|w|G|506
8JDL|1|w|G|507
8JDL|1|w|A|508
8JDL|1|w|OMG|509

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 6

40S ribosomal protein S9

Chain AK

40S ribosomal protein S24