HL_8JDM_003

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_003 not in the Motif Atlas

Homologous match to HL_6ORD_037

Geometric discrepancy: 0.2944

The information below is about HL_6ORD_037

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

143

Unit IDs

8JDM|1|B|G|53
8JDM|1|B|5MU|54
8JDM|1|B|PSU|55
8JDM|1|B|C|56
8JDM|1|B|G|57
8JDM|1|B|1MA|58
8JDM|1|B|U|59
8JDM|1|B|U|60
8JDM|1|B|C|61

Current chains

Chain B

tRNA (Tyr)

Nearby chains