HL_8JDM_026

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_026 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0796

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JDM|1|D|G|1561
8JDM|1|D|G|1562
8JDM|1|D|A|1563
8JDM|1|D|A|1564
8JDM|1|D|A|1565
8JDM|1|D|C|1566

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain 9

40S ribosomal protein S13

Chain w

Small subunit ribosomal RNA; SSU rRNA