HL_8JDM_030

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_030 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3023

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8JDM|1|D|G|1761
8JDM|1|D|C|1762
8JDM|1|D|C|1763
8JDM|1|D|G|1769
8JDM|1|D|A|1770
8JDM|1|D|U|1771

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L11