HL_8JDM_061

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_061 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1069

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8JDM|1|D|C|4270
8JDM|1|D|A|4271
8JDM|1|D|G|4272
8JDM|1|D|A|4273
8JDM|1|D|A|4274
8JDM|1|D|G|4275
8JDM|1|D|G|4276
8JDM|1|D|G|4277

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21

Chain t

60S ribosomal protein L36a