HL_8JDM_075

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8JDM|1|D|C|5023

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_075 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3063

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8JDM|1|D|C|5021
8JDM|1|D|U|5022
8JDM|1|D|C|5023
8JDM|1|D|C|5024
8JDM|1|D|C|5025
8JDM|1|D|U|5026
8JDM|1|D|C|5027
8JDM|1|D|G|5028

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain Z

60S ribosomal protein L22