HL_8JDM_079
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUGAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDM|1|F|G|68
8JDM|1|F|U|69
8JDM|1|F|G|70
8JDM|1|F|A|71
8JDM|1|F|A|72
8JDM|1|F|U|73
8JDM|1|F|U|74
8JDM|1|F|OMG|75
8JDM|1|F|C|76
8JDM|1|F|A|77
8JDM|1|F|G|78
8JDM|1|F|G|79
8JDM|1|F|A|80
8JDM|1|F|C|81
8JDM|1|F|A|82
8JDM|1|F|C|83
8JDM|1|F|A|84
8JDM|1|F|U|85
8JDM|1|F|U|86
8JDM|1|F|G|87
8JDM|1|F|A|88
8JDM|1|F|U|89
8JDM|1|F|C|90
Current chains
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L35
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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