HL_8JDM_081

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

8JDM|1|F|U|124, 8JDM|1|F|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_081 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.301

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8JDM|1|F|G|122
8JDM|1|F|U|123
8JDM|1|F|U|124
8JDM|1|F|C|125
8JDM|1|F|C|126
8JDM|1|F|U|127
8JDM|1|F|C|128

Current chains

Chain F

5.8S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain c

60S ribosomal protein L23a