HL_8JDM_092
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- ACU(PSU)UAA(A2M)UCCUU
- Length
- 13 nucleotides
- Bulged bases
- 8JDM|1|w|U|573
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDM_092 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.243
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|A|569
8JDM|1|w|C|570
8JDM|1|w|U|571
8JDM|1|w|PSU|572
8JDM|1|w|U|573
8JDM|1|w|A|574
8JDM|1|w|A|575
8JDM|1|w|A2M|576
8JDM|1|w|U|577
8JDM|1|w|C|578
8JDM|1|w|C|579
8JDM|1|w|U|580
8JDM|1|w|U|581
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain AK
- 40S ribosomal protein S24
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