HL_8JDM_102

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_102 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0852

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8JDM|1|w|U|1178
8JDM|1|w|G|1179
8JDM|1|w|C|1180
8JDM|1|w|A|1181
8JDM|1|w|A|1182
8JDM|1|w|A|1183

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain s

60S ribosomal protein L41

Chain u

60S ribosomal protein L37a