HL_8JDM_110

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8JDM|1|w|U|1621, 8JDM|1|w|U|1622, 8JDM|1|w|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|w|G|1613
8JDM|1|w|A|1614
8JDM|1|w|U|1615
8JDM|1|w|U|1616
8JDM|1|w|G|1617
8JDM|1|w|C|1618
8JDM|1|w|A|1619
8JDM|1|w|A|1620
8JDM|1|w|U|1621
8JDM|1|w|U|1622
8JDM|1|w|A|1623
8JDM|1|w|U|1624
8JDM|1|w|PSU|1625
8JDM|1|w|C|1626

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15

Chain AE

40S ribosomal protein S18

Chain AF

40S ribosomal protein S19

Chain AP

40S ribosomal protein S29