HL_8JFT_002
3D structure
- PDB id
- 8JFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GCAAAAUGC
- Length
- 9 nucleotides
- Bulged bases
- 8JFT|1|B|A|62, 8JFT|1|B|U|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JFT_002 not in the Motif Atlas
- Geometric match to HL_6CF2_001
- Geometric discrepancy: 0.3921
- The information below is about HL_6CF2_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28253.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8JFT|1|B|G|58
8JFT|1|B|C|59
8JFT|1|B|A|60
8JFT|1|B|A|61
8JFT|1|B|A|62
8JFT|1|B|A|63
8JFT|1|B|U|64
8JFT|1|B|G|65
8JFT|1|B|C|66
Current chains
- Chain B
- sgRNA of SaCas9
Nearby chains
- Chain A
- CRISPR-associated endonuclease Cas9
Coloring options: