HL_8JFT_004

3D structure

PDB id

8JFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

8JFT|1|B|A|62, 8JFT|1|B|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JFT_004 not in the Motif Atlas

Geometric match to HL_7EL1_002

Geometric discrepancy: 0.1861

The information below is about HL_7EL1_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

8JFT|1|B|C|59
8JFT|1|B|A|60
8JFT|1|B|A|61
8JFT|1|B|A|62
8JFT|1|B|A|63
8JFT|1|B|U|64
8JFT|1|B|G|65

Current chains

Chain B

sgRNA of SaCas9

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9