HL_8JOZ_004

3D structure

PDB id

8JOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser

Experimental method

X-RAY DIFFRACTION

Resolution

2.22 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

8JOZ|1|B|G|53
8JOZ|1|B|5MU|54
8JOZ|1|B|PSU|55
8JOZ|1|B|C|56
8JOZ|1|B|G|57
8JOZ|1|B|A|58
8JOZ|1|B|A|59
8JOZ|1|B|U|60
8JOZ|1|B|C|61

Current chains

Chain B

tRNA Ser (88-MER)

Nearby chains