HL_8JSH_008

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8JSH|1|g|C|330, 8JSH|1|g|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2486

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8JSH|1|g|A|320
8JSH|1|g|A|321
8JSH|1|g|C|322
8JSH|1|g|U|323
8JSH|1|g|G|324
8JSH|1|g|A|325
8JSH|1|g|G|326
8JSH|1|g|A|327
8JSH|1|g|C|328
8JSH|1|g|A|329
8JSH|1|g|C|330
8JSH|1|g|G|331
8JSH|1|g|G|332
8JSH|1|g|U|333

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20

Chain y

30S ribosomal protein S16