HL_8JSH_012

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8JSH|1|g|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4145

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8JSH|1|g|G|462
8JSH|1|g|U|463
8JSH|1|g|U|464
8JSH|1|g|A|465
8JSH|1|g|A|466
8JSH|1|g|U|467
8JSH|1|g|A|468
8JSH|1|g|C|469
8JSH|1|g|C|470

Current chains

Chain g

16S ribosomal RNA

Nearby chains