HL_8JSH_014

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGCUCAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_014 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3331

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8JSH|1|g|G|616
8JSH|1|g|G|617
8JSH|1|g|C|618
8JSH|1|g|U|619
8JSH|1|g|C|620
8JSH|1|g|A|621
8JSH|1|g|A|622
8JSH|1|g|C|623
8JSH|1|g|C|624

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain y

30S ribosomal protein S16