HL_8JSH_023

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

8JSH|1|g|A|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_023 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.3021

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JSH|1|g|G|1515
8JSH|1|g|G|1516
8JSH|1|g|G|1517
8JSH|1|g|A|1518
8JSH|1|g|A|1519
8JSH|1|g|C|1520

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain A

Translation initiation factor IF-3