HL_8K2A_004

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAAUU

Length

5 nucleotides

Bulged bases

8K2A|1|L1|A|134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_004 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.3392

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8K2A|1|L1|A|133
8K2A|1|L1|A|134
8K2A|1|L1|A|135
8K2A|1|L1|U|136
8K2A|1|L1|U|137

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LV

39S ribosomal protein L22, mitochondrial

Chain LW

Large ribosomal subunit protein uL23m

Chain LX

Large ribosomal subunit protein uL24m

Chain Ls

Large ribosomal subunit protein mL45