HL_8K2A_014
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAAC
- Length
- 8 nucleotides
- Bulged bases
- 8K2A|1|L1|A|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2A_014 not in the Motif Atlas
- Homologous match to HL_5J7L_160
- Geometric discrepancy: 0.2277
- The information below is about HL_5J7L_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_42998.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8K2A|1|L1|G|459
8K2A|1|L1|A|460
8K2A|1|L1|A|461
8K2A|1|L1|A|462
8K2A|1|L1|A|463
8K2A|1|L1|A|464
8K2A|1|L1|A|465
8K2A|1|L1|C|466
Current chains
- Chain L1
- 16S rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LJ
- Large ribosomal subunit protein uL10m
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain SR
- Large ribosomal subunit protein mL66
Coloring options: