HL_8K2A_023

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

8K2A|1|L1|A|851, 8K2A|1|L1|C|853, 8K2A|1|L1|U|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|L1|A|848
8K2A|1|L1|G|849
8K2A|1|L1|C|850
8K2A|1|L1|A|851
8K2A|1|L1|U|852
8K2A|1|L1|C|853
8K2A|1|L1|A|854
8K2A|1|L1|C|855
8K2A|1|L1|C|856
8K2A|1|L1|A|857
8K2A|1|L1|G|858
8K2A|1|L1|U|859
8K2A|1|L1|A|860
8K2A|1|L1|U|861
8K2A|1|L1|U|862

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37

Chain S1

Small subunit ribosomal RNA; SSU rRNA