HL_8K2A_027
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAGAGGC
- Length
- 10 nucleotides
- Bulged bases
- 8K2A|1|L1|A|1023, 8K2A|1|L1|A|1024, 8K2A|1|L1|G|1025
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2A_027 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.128
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8K2A|1|L1|G|1020
8K2A|1|L1|U|1021
8K2A|1|L1|G|1022
8K2A|1|L1|A|1023
8K2A|1|L1|A|1024
8K2A|1|L1|G|1025
8K2A|1|L1|A|1026
8K2A|1|L1|G|1027
8K2A|1|L1|G|1028
8K2A|1|L1|C|1029
Current chains
- Chain L1
- 16S rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Lf
- Large ribosomal subunit protein bL32m
- Chain SR
- Large ribosomal subunit protein mL66
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