HL_8K2A_056

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

8K2A|1|S1|A|636, 8K2A|1|S1|U|637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_056 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2416

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8K2A|1|S1|U|634
8K2A|1|S1|G|635
8K2A|1|S1|A|636
8K2A|1|S1|U|637
8K2A|1|S1|G|638
8K2A|1|S1|A|639
8K2A|1|S1|A|640

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS2m

Chain SE

Small ribosomal subunit protein uS5m

Chain SF

Small ribosomal subunit protein bS6m

Chain SY

Small ribosomal subunit protein mS23