HL_8K2A_058

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

8K2A|1|S1|C|729, 8K2A|1|S1|C|730, 8K2A|1|S1|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_058 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1569

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8K2A|1|S1|U|726
8K2A|1|S1|A|727
8K2A|1|S1|C|728
8K2A|1|S1|C|729
8K2A|1|S1|C|730
8K2A|1|S1|C|731
8K2A|1|S1|A|732

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Se

Small ribosomal subunit protein mS29