HL_8K2A_061

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

8K2A|1|S1|C|878, 8K2A|1|S1|U|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_061 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2797

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8K2A|1|S1|U|875
8K2A|1|S1|A|876
8K2A|1|S1|A|877
8K2A|1|S1|C|878
8K2A|1|S1|U|879
8K2A|1|S1|A|880
8K2A|1|S1|A|881

Current chains

Chain S1

12S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein mS27

Chain Sj

Small ribosomal subunit protein mS34