HL_8K2C_007

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8K2C|1|L5|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_007 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2249

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8K2C|1|L5|C|131
8K2C|1|L5|G|132
8K2C|1|L5|C|133
8K2C|1|L5|G|134
8K2C|1|L5|G|135
8K2C|1|L5|C|136
8K2C|1|L5|G|137

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37