HL_8K2C_043

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_043 not in the Motif Atlas

Geometric match to HL_5TBW_017

Geometric discrepancy: 0.1558

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K2C|1|L5|C|2561
8K2C|1|L5|G|2562
8K2C|1|L5|C|2563
8K2C|1|L5|G|2564
8K2C|1|L5|A|2565
8K2C|1|L5|G|2566

Current chains

Chain L5

28S rRNA

Nearby chains