HL_8K2C_060
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUG*A
- Length
- 113 nucleotides
- Bulged bases
- 8K2C|1|L5|G|3958, 8K2C|1|L5|A|3962, 8K2C|1|L5|G|4035, 8K2C|1|L5|C|4038, 8K2C|1|L5|U|4044, 8K2C|1|L5|C|4054, 8K2C|1|L5|G|4007, 8K2C|1|L5|C|4008, 8K2C|1|L5|C|4009, 8K2C|1|L5|C|4010, 8K2C|1|L5|G|4011, 8K2C|1|L5|G|4012, 8K2C|1|L5|G|4013, 8K2C|1|L5|G|4014, 8K2C|1|L5|C|4015, 8K2C|1|L5|G|4016, 8K2C|1|L5|G|4017, 8K2C|1|L5|G|4018, 8K2C|1|L5|G|4019, 8K2C|1|L5|U|4020, 8K2C|1|L5|C|4021, 8K2C|1|L5|C|4022, 8K2C|1|L5|G|4023, 8K2C|1|L5|C|4024, 8K2C|1|L5|C|4025, 8K2C|1|L5|G|4026, 8K2C|1|L5|G|4027, 8K2C|1|L5|C|4028, 8K2C|1|L5|C|4029, 8K2C|1|L5|C|4030, 8K2C|1|L5|U|4031, 8K2C|1|L5|G|4032, 8K2C|1|L5|C|4033, 8K2C|1|L5|G|4034, 8K2C|1|L5|G|4035, 8K2C|1|L5|C|4038, 8K2C|1|L5|G|4039, 8K2C|1|L5|G|4042, 8K2C|1|L5|U|4044, 8K2C|1|L5|G|4045, 8K2C|1|L5|C|4051, 8K2C|1|L5|C|4052, 8K2C|1|L5|A|4053, 8K2C|1|L5|C|4054
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2C|1|L5|U|3950
8K2C|1|L5|G|3951
8K2C|1|L5|A|3952
8K2C|1|L5|G|3953
8K2C|1|L5|A|3954
8K2C|1|L5|G|3955
8K2C|1|L5|G|3956
8K2C|1|L5|U|3957
8K2C|1|L5|G|3958
8K2C|1|L5|U|3959
8K2C|1|L5|A|3960
8K2C|1|L5|G|3961
8K2C|1|L5|A|3962
8K2C|1|L5|A|3963
8K2C|1|L5|U|3964
8K2C|1|L5|A|3965
8K2C|1|L5|A|3966
8K2C|1|L5|G|3967
8K2C|1|L5|U|3968
8K2C|1|L5|G|3969
8K2C|1|L5|G|3970
8K2C|1|L5|G|3971
8K2C|1|L5|A|3972
8K2C|1|L5|G|3973
8K2C|1|L5|G|3974
8K2C|1|L5|C|3975
8K2C|1|L5|C|3976
8K2C|1|L5|C|3977
8K2C|1|L5|G|4034
8K2C|1|L5|G|4035
8K2C|1|L5|G|4036
8K2C|1|L5|C|4037
8K2C|1|L5|C|4038
8K2C|1|L5|G|4039
8K2C|1|L5|C|4040
8K2C|1|L5|C|4041
8K2C|1|L5|G|4042
8K2C|1|L5|G|4043
8K2C|1|L5|U|4044
8K2C|1|L5|G|4045
8K2C|1|L5|A|4046
8K2C|1|L5|A|4047
8K2C|1|L5|A|4048
8K2C|1|L5|U|4049
8K2C|1|L5|A|4050
8K2C|1|L5|C|4051
8K2C|1|L5|C|4052
8K2C|1|L5|A|4053
8K2C|1|L5|C|4054
8K2C|1|L5|U|4055
8K2C|1|L5|A|4056
8K2C|1|L5|C|4057
8K2C|1|L5|U|4058
8K2C|1|L5|C|4059
8K2C|1|L5|U|4060
8K2C|1|L5|G|4061
8K2C|1|L5|A|4062
8K2C|1|L5|G|4007
8K2C|1|L5|C|4008
8K2C|1|L5|C|4009
8K2C|1|L5|C|4010
8K2C|1|L5|G|4011
8K2C|1|L5|G|4012
8K2C|1|L5|G|4013
8K2C|1|L5|G|4014
8K2C|1|L5|C|4015
8K2C|1|L5|G|4016
8K2C|1|L5|G|4017
8K2C|1|L5|G|4018
8K2C|1|L5|G|4019
8K2C|1|L5|U|4020
8K2C|1|L5|C|4021
8K2C|1|L5|C|4022
8K2C|1|L5|G|4023
8K2C|1|L5|C|4024
8K2C|1|L5|C|4025
8K2C|1|L5|G|4026
8K2C|1|L5|G|4027
8K2C|1|L5|C|4028
8K2C|1|L5|C|4029
8K2C|1|L5|C|4030
8K2C|1|L5|U|4031
8K2C|1|L5|G|4032
8K2C|1|L5|C|4033
8K2C|1|L5|G|4034
8K2C|1|L5|G|4035
8K2C|1|L5|G|4036
8K2C|1|L5|C|4037
8K2C|1|L5|C|4038
8K2C|1|L5|G|4039
8K2C|1|L5|C|4040
8K2C|1|L5|C|4041
8K2C|1|L5|G|4042
8K2C|1|L5|G|4043
8K2C|1|L5|U|4044
8K2C|1|L5|G|4045
8K2C|1|L5|A|4046
8K2C|1|L5|A|4047
8K2C|1|L5|A|4048
8K2C|1|L5|U|4049
8K2C|1|L5|A|4050
8K2C|1|L5|C|4051
8K2C|1|L5|C|4052
8K2C|1|L5|A|4053
8K2C|1|L5|C|4054
8K2C|1|L5|U|4055
8K2C|1|L5|A|4056
8K2C|1|L5|C|4057
8K2C|1|L5|U|4058
8K2C|1|L5|C|4059
8K2C|1|L5|U|4060
8K2C|1|L5|G|4061
*
8K2C|1|L5|A|4062
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain Li
- 60S ribosomal protein L36
- Chain Lz
- 60S ribosomal protein L10a
- Chain SB
- 40S ribosomal protein S3a
Coloring options: