HL_8K2C_066

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_066 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0851

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8K2C|1|L5|C|4270
8K2C|1|L5|A|4271
8K2C|1|L5|G|4272
8K2C|1|L5|A|4273
8K2C|1|L5|A|4274
8K2C|1|L5|G|4275
8K2C|1|L5|G|4276
8K2C|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a