HL_8K2C_076

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8K2C|1|L5|G|4694, 8K2C|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0657

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8K2C|1|L5|C|4688
8K2C|1|L5|U|4689
8K2C|1|L5|G|4690
8K2C|1|L5|A|4691
8K2C|1|L5|A|4692
8K2C|1|L5|C|4693
8K2C|1|L5|G|4694
8K2C|1|L5|C|4695
8K2C|1|L5|C|4696
8K2C|1|L5|U|4697
8K2C|1|L5|C|4698
8K2C|1|L5|U|4699
8K2C|1|L5|A|4700
8K2C|1|L5|A|4701
8K2C|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40