HL_8K2Z_005

3D structure

PDB id

8K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a human mascRNA A2G

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2Z_005 not in the Motif Atlas

Geometric match to HL_8G9Z_004

Geometric discrepancy: 0.1103

The information below is about HL_8G9Z_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8K2Z|1|B|G|38
8K2Z|1|B|U|39
8K2Z|1|B|U|40
8K2Z|1|B|C|41
8K2Z|1|B|A|42
8K2Z|1|B|A|43
8K2Z|1|B|A|44
8K2Z|1|B|U|45
8K2Z|1|B|C|46

Current chains

Chain B

RNA (57-MER)

Nearby chains