HL_8K3O_017
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8K3O|1|A|G|791
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K3O_017 not in the Motif Atlas
- Geometric match to HL_5UD5_001
- Geometric discrepancy: 0.2687
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
8K3O|1|A|G|786
8K3O|1|A|A|787
8K3O|1|A|U|788
8K3O|1|A|U|789
8K3O|1|A|A|790
8K3O|1|A|G|791
8K3O|1|A|A|792
8K3O|1|A|U|793
8K3O|1|A|A|794
8K3O|1|A|C|795
8K3O|1|A|C|796
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain X
- 30S ribosomal protein S21
Coloring options: