HL_8K3O_022

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

8K3O|1|A|A|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K3O_022 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2552

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8K3O|1|A|A|1012
8K3O|1|A|G|1013
8K3O|1|A|A|1014
8K3O|1|A|G|1015
8K3O|1|A|A|1016
8K3O|1|A|U|1017

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19