HL_8K4E_008

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K4E_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1172

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8K4E|1|A|A|320
8K4E|1|A|A|321
8K4E|1|A|C|322
8K4E|1|A|U|323
8K4E|1|A|G|324
8K4E|1|A|A|325
8K4E|1|A|G|326
8K4E|1|A|A|327
8K4E|1|A|C|328
8K4E|1|A|A|329
8K4E|1|A|C|330
8K4E|1|A|G|331
8K4E|1|A|G|332
8K4E|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20