HL_8K4E_023

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8K4E|1|A|U|1030, 8K4E|1|A|C|1031

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K4E_023 not in the Motif Atlas

Geometric match to HL_5J7L_171

Geometric discrepancy: 0.3259

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8K4E|1|A|C|1028
8K4E|1|A|U|1029
8K4E|1|A|U|1030
8K4E|1|A|C|1031
8K4E|1|A|G|1032
8K4E|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains