HL_8K82_005

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8K82|1|C1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0851

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8K82|1|C1|U|194
8K82|1|C1|U|195
8K82|1|C1|G|196
8K82|1|C1|G|197
8K82|1|C1|A|198
8K82|1|C1|A|199
8K82|1|C1|C|200
8K82|1|C1|A|201

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LY

Large ribosomal subunit protein uL24A

Chain Le

Large ribosomal subunit protein eL32