HL_8K82_010

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0755

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K82|1|C1|A|357
8K82|1|C1|G|358
8K82|1|C1|U|359
8K82|1|C1|G|360
8K82|1|C1|A|361
8K82|1|C1|U|362

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain Lj

Large ribosomal subunit protein eL37A

Chain Ll

Large ribosomal subunit protein eL39