HL_8K82_027

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8K82|1|C1|U|1241, 8K82|1|C1|G|1242, 8K82|1|C1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|C|1239
8K82|1|C1|A|1240
8K82|1|C1|U|1241
8K82|1|C1|G|1242
8K82|1|C1|G|1243
8K82|1|C1|A|1244
8K82|1|C1|A|1245
8K82|1|C1|G|1246
8K82|1|C1|U|1247
8K82|1|C1|C|1248
8K82|1|C1|G|1249

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein uL11A

Chain P0

Large ribosomal subunit protein uL10