HL_8K82_031

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_031 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0982

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8K82|1|C1|A|1462
8K82|1|C1|U|1463
8K82|1|C1|G|1464
8K82|1|C1|A|1465
8K82|1|C1|G|1466
8K82|1|C1|A|1467
8K82|1|C1|A|1468
8K82|1|C1|C|1469
8K82|1|C1|U|1470

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22A

Chain LR

Large ribosomal subunit protein eL19A

Chain Ld

Large ribosomal subunit protein eL31A