HL_8K82_040

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8K82|1|C1|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_040 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1093

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8K82|1|C1|C|1792
8K82|1|C1|C|1793
8K82|1|C1|G|1794
8K82|1|C1|U|1795
8K82|1|C1|G|1796

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL43A