HL_8K82_051

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8K82|1|C1|A|2372, 8K82|1|C1|A|2373, 8K82|1|C1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0472

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|G|2369
8K82|1|C1|G|2370
8K82|1|C1|G|2371
8K82|1|C1|A|2372
8K82|1|C1|A|2373
8K82|1|C1|C|2374
8K82|1|C1|G|2375
8K82|1|C1|G|2376
8K82|1|C1|G|2377
8K82|1|C1|C|2378

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

Large ribosomal subunit protein eL32