HL_8K82_053

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_053 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2396

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8K82|1|C1|A|2535
8K82|1|C1|A|2536
8K82|1|C1|U|2537
8K82|1|C1|U|2538
8K82|1|C1|C|2539
8K82|1|C1|A|2540
8K82|1|C1|U|2541
8K82|1|C1|U|2542
8K82|1|C1|U|2543
8K82|1|C1|U|2544

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8A

Chain Lg

Large ribosomal subunit protein eL34A

Chain SB

40S ribosomal protein S1-A