HL_8K82_055

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8K82|1|C1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1122

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8K82|1|C1|C|2616
8K82|1|C1|U|2617
8K82|1|C1|G|2618
8K82|1|C1|G|2619
8K82|1|C1|G|2620
8K82|1|C1|G|2621
8K82|1|C1|C|2622
8K82|1|C1|G|2623
8K82|1|C1|G|2624

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C5

Transfer RNA; tRNA

Chain LI

Large ribosomal subunit protein uL16

Chain Lb

Large ribosomal subunit protein eL29