HL_8K82_065

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_065 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.0746

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K82|1|C1|C|2963
8K82|1|C1|G|2964
8K82|1|C1|U|2965
8K82|1|C1|G|2966
8K82|1|C1|A|2967
8K82|1|C1|G|2968

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C5

Transfer RNA; tRNA

Chain CN

General negative regulator of transcription subunit 5

Chain LA

Large ribosomal subunit protein uL2A