HL_8K82_068

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8K82|1|C1|G|3116, 8K82|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0535

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|C|3110
8K82|1|C1|U|3111
8K82|1|C1|G|3112
8K82|1|C1|A|3113
8K82|1|C1|A|3114
8K82|1|C1|C|3115
8K82|1|C1|G|3116
8K82|1|C1|C|3117
8K82|1|C1|C|3118
8K82|1|C1|U|3119
8K82|1|C1|C|3120
8K82|1|C1|U|3121
8K82|1|C1|A|3122
8K82|1|C1|A|3123
8K82|1|C1|G|3124

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6A

Chain LO

Large ribosomal subunit protein uL13A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein