HL_8K82_088

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C2|U|650
8K82|1|C2|G|651
8K82|1|C2|G|652
8K82|1|C2|C|653
8K82|1|C2|C|654
8K82|1|C2|G|655
8K82|1|C2|G|656
8K82|1|C2|U|657
8K82|1|C2|C|658
8K82|1|C2|G|676
8K82|1|C2|G|677
8K82|1|C2|A|678
8K82|1|C2|U|679
8K82|1|C2|U|680
8K82|1|C2|U|681
8K82|1|C2|C|682
8K82|1|C2|C|683
8K82|1|C2|A|684

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A