HL_8K82_089

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8K82|1|C2|C|709, 8K82|1|C2|U|711, 8K82|1|C2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_089 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3127

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8K82|1|C2|G|703
8K82|1|C2|C|704
8K82|1|C2|U|705
8K82|1|C2|A|706
8K82|1|C2|A|707
8K82|1|C2|C|708
8K82|1|C2|C|709
8K82|1|C2|U|710
8K82|1|C2|U|711
8K82|1|C2|G|712
8K82|1|C2|A|713
8K82|1|C2|G|714
8K82|1|C2|C|726
8K82|1|C2|U|727
8K82|1|C2|U|728
8K82|1|C2|G|729
8K82|1|C2|G|730
8K82|1|C2|C|731
8K82|1|C2|G|732
8K82|1|C2|A|733
8K82|1|C2|A|734
8K82|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A