HL_8K82_101

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_101 not in the Motif Atlas

Homologous match to HL_8C3A_219

Geometric discrepancy: 0.0726

The information below is about HL_8C3A_219

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8K82|1|C2|A|1296
8K82|1|C2|G|1297
8K82|1|C2|U|1298
8K82|1|C2|G|1299
8K82|1|C2|A|1300
8K82|1|C2|U|1301

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2A

Chain SC

40S ribosomal protein S2