HL_8K82_103

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_103 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.3288

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8K82|1|C2|C|1359
8K82|1|C2|A|1360
8K82|1|C2|U|1361
8K82|1|C2|U|1362
8K82|1|C2|U|1363
8K82|1|C2|G|1364

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein uS9A

Chain ST

Small ribosomal subunit protein eS19A