HL_8K82_104

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_104 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3858

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8K82|1|C2|U|1396
8K82|1|C2|U|1397
8K82|1|C2|U|1398
8K82|1|C2|C|1399
8K82|1|C2|A|1400
8K82|1|C2|A|1401
8K82|1|C2|G|1402

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein eS17A